Kouki1998

I am fairly new to working on cars so bare with me.

so i am doing a timing rebuild on a ka and i've got it all lined up with where the marks are supposed to be, but every time i turn the crank it always changes where the marks are and its always about a tooth off (i have read on some forums that it i supposed to line up after two full rotations). well my question is whether this is normal? i also want to add that i made the mistake of moving the crank when it was at tdc with the front chain off, could this be the cause of the timing being all off? i have redone the timing but im still having the same issue...

any feedback is appreciated