QuickShift

I'm swapping engines on a 95 twin turbo with a manual trans, and the motor I bought turns out to be from an automatic... The turbos on this engine use the .54 turbo exhaust housings, while the manual uses the .63

My question is: Will the .54 housings line up with the stock exhaust that is meant for the 'manual' turbos? I know the flanges are the same, but I don't know if the spacing is different..

I would just use the .63's but one is damaged. Just hoping someone knows before I go through the work to find out lol....