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3.5" intake manifold into a 3" intake? Seems counter intuitive to me... and it will also throw the maf out of wack...
And your engine harness should have little to do with your body accessories working... Start with the circuit diagram in the EC section and highlight any sensor that needs power supplied. Then, find a DTC related to that sensor to find wiring diagram and where to pick up wires. You shouldn't have to hack up the vq harness at all, just splice into the connectors (3 or 4?) near the ECM.
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